Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3934

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3934: 12302 - K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit, at 940362 to 944260 12302 mRNA_3935: 12303 - HMMPfam-ER protein Pkr1-PF08636, at 944779 to 945196 12303

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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939,465 - 0.7
939,593 + -0.4
939,616 + 0.4
939,621 + -0.1
939,622 - 1.4
939,625 + -0.3
939,626 - 0.6
939,821 + -0.1
939,862 - -0.6
939,864 - -1.7
939,870 + 1.6
939,877 - 0.4
939,878 - 1.0
939,879 - 0.0
939,885 + 1.0
939,890 + 0.0
939,893 - 0.9
939,895 + 0.4
939,902 - 0.6
939,903 + -0.1
939,905 + 1.0
939,907 - 0.3
939,913 + 1.4
939,917 - -0.3
939,929 + -0.5
940,204 + 1.4
940,218 + 0.9
940,219 - 0.4
940,336 - 0.6
940,365 + 0.0
940,366 - -1.1
940,380 - 0.6
940,817 + 12302 mRNA_3934 0.12 -0.1
940,956 + 12302 mRNA_3934 0.15 -0.7
940,990 + 12302 mRNA_3934 0.16 -0.7
941,647 + 12302 mRNA_3934 0.33 0.0
941,961 - 12302 mRNA_3934 0.41 1.1
941,991 - 12302 mRNA_3934 0.42 -0.8
942,030 + 12302 mRNA_3934 0.43 -2.2
942,104 + 12302 mRNA_3934 0.45 0.2
942,998 - 12302 mRNA_3934 0.68 0.2
943,330 - 12302 mRNA_3934 0.76 0.2
943,363 + 12302 mRNA_3934 0.77 -0.0
943,473 + 12302 mRNA_3934 0.80 1.4
943,524 + 12302 mRNA_3934 0.81 0.4
943,618 - 12302 mRNA_3934 0.84 -1.2
943,638 - 12302 mRNA_3934 0.84 -0.6
943,668 + 12302 mRNA_3934 0.85 0.4
944,022 - -0.2
944,261 - -1.8
944,525 + 0.7
944,756 + 0.2
945,105 - 12303 mRNA_3935 0.78 0.3
945,141 - 12303 mRNA_3935 0.87 -0.4
945,225 + -0.0
945,231 + 0.0
945,233 + -0.3
945,252 - 0.3
945,253 + -0.9