Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3873

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800106 to 800939 12241 mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801011 to 802122 12242

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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799,203 - 12240 mRNA_3872 0.86 0.1
799,207 - 12240 mRNA_3872 0.86 -0.2
799,606 - 0.1
800,119 + 0.6
800,362 - 12241 mRNA_3873 0.31 0.8
800,372 + 12241 mRNA_3873 0.32 -0.7
800,537 - 12241 mRNA_3873 0.52 -1.0
800,689 - 12241 mRNA_3873 0.70 1.3
800,696 + 12241 mRNA_3873 0.71 2.2
800,696 + 12241 mRNA_3873 0.71 0.5
800,729 + 12241 mRNA_3873 0.75 0.0
800,781 - 12241 mRNA_3873 0.81 1.2
800,841 - 12241 mRNA_3873 0.88 1.8
800,845 + 12241 mRNA_3873 0.89 0.6
800,881 - 0.1
800,960 - -0.0
801,017 + 0.3
801,111 - 0.8
801,117 + 0.7
801,134 + 12242 mRNA_3874 0.11 -0.1
801,141 + 12242 mRNA_3874 0.12 1.7
801,387 - 12242 mRNA_3874 0.34 0.4
801,414 - 12242 mRNA_3874 0.36 -0.9
801,831 + 12242 mRNA_3874 0.74 1.3
801,837 - 12242 mRNA_3874 0.74 -0.1
801,844 + 12242 mRNA_3874 0.75 2.1
801,860 + 12242 mRNA_3874 0.76 -1.4