Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3581

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97177 to 97844 11948 mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97924 to 100153 11949 mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100447 to 103297 11950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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96,941 - -0.8
97,069 - -0.6
97,201 - -0.8
97,372 + 11948 mRNA_3580 0.29 1.2
97,627 - 11948 mRNA_3580 0.67 0.3
97,802 - 0.8
97,809 + -1.6
97,821 - 0.4
97,822 + 0.3
97,854 - 0.4
97,854 + 0.1
97,855 - -0.7
97,858 + -1.7
97,858 - -0.6
97,860 - 0.3
97,863 + 1.3
97,877 + -0.2
97,877 + -1.2
97,881 + 0.0
97,989 - -0.2
98,009 - 1.5
98,065 + 0.5
98,068 - 0.3
98,306 - 11949 mRNA_3581 0.17 1.0
98,334 - 11949 mRNA_3581 0.18 0.7
98,338 - 11949 mRNA_3581 0.19 0.5
98,343 - 11949 mRNA_3581 0.19 0.0
98,344 - 11949 mRNA_3581 0.19 -0.1
98,344 + 11949 mRNA_3581 0.19 -0.7
98,355 + 11949 mRNA_3581 0.19 -0.8
98,358 + 11949 mRNA_3581 0.19 1.8
98,378 + 11949 mRNA_3581 0.20 -0.4
98,501 - 11949 mRNA_3581 0.26 1.5
98,514 + 11949 mRNA_3581 0.26 0.2
98,604 + 11949 mRNA_3581 0.30 0.4
98,793 - 11949 mRNA_3581 0.39 0.4
99,075 - 11949 mRNA_3581 0.52 1.0
99,096 + 11949 mRNA_3581 0.53 0.3
99,361 - 11949 mRNA_3581 0.64 0.5
99,407 + 11949 mRNA_3581 0.67 0.2
99,518 - 11949 mRNA_3581 0.71 -0.1
99,528 - 11949 mRNA_3581 0.72 0.2
99,557 - 11949 mRNA_3581 0.73 0.6
99,652 + 11949 mRNA_3581 0.77 -0.4
99,703 - 11949 mRNA_3581 0.80 -1.2
99,858 - 11949 mRNA_3581 0.87 1.1
100,348 - 0.6
100,648 - -1.5
101,094 - 11950 mRNA_3582 0.23 0.6