Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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37,505 + -0.4
37,550 - -0.1
37,558 - 0.1
37,568 - -0.2
37,569 + 1.7
37,571 + 2.6
37,609 + 1.0
37,610 - -1.2
37,630 - 11923 mRNA_3555 0.12 -0.2
37,630 + 11923 mRNA_3555 0.12 0.9
37,632 + 11923 mRNA_3555 0.12 -0.9
37,636 + 11923 mRNA_3555 0.13 0.3
37,646 + 11923 mRNA_3555 0.14 -0.3
37,650 - 11923 mRNA_3555 0.15 0.5
37,684 - 11923 mRNA_3555 0.19 1.3
37,746 + 11923 mRNA_3555 0.27 -0.2
37,753 + 11923 mRNA_3555 0.28 -0.5
37,760 + 11923 mRNA_3555 0.29 0.7
37,763 + 11923 mRNA_3555 0.29 0.8
37,812 - 11923 mRNA_3555 0.36 0.6
37,822 - 11923 mRNA_3555 0.37 -0.4
37,833 + 11923 mRNA_3555 0.38 -0.2
37,833 - 11923 mRNA_3555 0.38 0.4
37,835 + 11923 mRNA_3555 0.38 -1.3
37,844 - 11923 mRNA_3555 0.40 0.8
37,848 - 11923 mRNA_3555 0.40 -1.0
37,861 + 11923 mRNA_3555 0.42 -1.2
37,865 - 11923 mRNA_3555 0.42 -0.9
37,867 + 11923 mRNA_3555 0.43 0.6
37,870 + 11923 mRNA_3555 0.43 1.0
37,871 + 11923 mRNA_3555 0.43 1.3
37,877 + 11923 mRNA_3555 0.44 2.8
37,885 - 11923 mRNA_3555 0.45 0.5
37,920 + 11923 mRNA_3555 0.49 0.7
37,920 + 11923 mRNA_3555 0.49 1.8
37,924 + 11923 mRNA_3555 0.50 0.1
37,931 + 11923 mRNA_3555 0.51 -0.0
37,979 + 11923 mRNA_3555 0.57 -0.4
37,984 + 11923 mRNA_3555 0.58 -0.1
37,994 + 11923 mRNA_3555 0.59 -0.7
38,032 + 11923 mRNA_3555 0.64 0.3
38,081 - 11923 mRNA_3555 0.70 -3.2
38,081 - 11923 mRNA_3555 0.70 2.9
38,084 - 11923 mRNA_3555 0.71 0.3
38,086 + 11923 mRNA_3555 0.71 0.5
38,090 + 11923 mRNA_3555 0.71 0.5
38,115 + 11923 mRNA_3555 0.75 -0.4
38,128 + 11923 mRNA_3555 0.76 0.1
38,163 - 11923 mRNA_3555 0.81 1.0
38,183 + 11923 mRNA_3555 0.83 -0.2
38,193 + 11923 mRNA_3555 0.85 -1.3
38,234 + 11923 mRNA_3555 0.90 -2.1
38,253 - 0.1
38,254 - 1.5
38,256 - 0.2
38,257 + 1.2
38,258 - 0.7
38,258 - -0.3
38,269 + 0.9
38,272 + 2.5
38,275 + 0.2
38,285 + 1.1
38,411 + 0.1
38,421 - 0.2
38,431 - 1.1
38,476 + 0.0
38,548 + -1.5
38,580 + -0.7
38,612 + -0.1
38,706 - 11924 mRNA_3556 0.11 0.2
38,767 + 11924 mRNA_3556 0.14 0.4
38,904 + 11924 mRNA_3556 0.19 1.2
39,199 - 11924 mRNA_3556 0.32 0.2
39,206 + 11924 mRNA_3556 0.32 0.9
39,447 - 11924 mRNA_3556 0.42 0.1
39,471 - 11924 mRNA_3556 0.43 -0.2
39,481 + 11924 mRNA_3556 0.44 -1.0
39,517 + 11924 mRNA_3556 0.45 2.2
39,760 + 11924 mRNA_3556 0.55 0.2
39,781 - 11924 mRNA_3556 0.56 0.3
39,865 - 11924 mRNA_3556 0.60 -0.7
40,205 - 11924 mRNA_3556 0.74 -0.1
40,298 + 11924 mRNA_3556 0.78 -0.1
40,353 + 11924 mRNA_3556 0.80 0.8
40,357 + 11924 mRNA_3556 0.81 0.8
40,402 - 11924 mRNA_3556 0.82 -0.1
40,937 + 1.0
40,974 + 0.4
41,079 - 1.0
41,080 - -0.2
41,082 - -0.4
41,084 + -0.9
41,224 + 0.1
41,226 - 2.1
41,227 + 1.7
41,234 + -0.0
41,242 + -0.1
41,261 - 0.2
41,369 - -0.1
41,371 - 0.5
41,391 - -0.4
41,396 + 0.2
41,405 + -1.3
41,564 - -0.1
41,678 - -1.2
41,692 - 11925 mRNA_3557 0.10 0.1
41,692 + 11925 mRNA_3557 0.10 -0.4