Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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584,873 - 11767 mRNA_3399 0.75 0.8
584,957 - 11767 mRNA_3399 0.78 1.2
585,004 - 11767 mRNA_3399 0.79 0.5
585,100 + 11767 mRNA_3399 0.82 -2.0
585,100 - 11767 mRNA_3399 0.82 -1.6
585,220 + 11767 mRNA_3399 0.85 0.1
585,303 - 11767 mRNA_3399 0.88 0.9
585,320 + 11767 mRNA_3399 0.88 -0.8
585,362 + 11767 mRNA_3399 0.90 0.0
585,451 + 2.7
585,474 - -0.6
585,514 - 0.1
585,613 - 0.7
585,629 + -0.1
585,638 + 0.2
585,670 + 0.7
585,767 + -0.3
585,777 - 3.0
585,792 - -0.1
585,803 + 1.4
586,039 - 11768 mRNA_3400 0.12 -0.6
587,250 - 11768 mRNA_3400 0.84 1.1
587,294 + 11768 mRNA_3400 0.86 1.2
587,300 - 11768 mRNA_3400 0.87 0.1
587,357 - 1.3
587,397 - -0.0
587,412 + 1.1
587,414 + 1.1
587,414 + 1.4
587,419 + 2.2
587,461 - -0.0
587,466 - 0.2
587,473 - 0.3
587,490 - 1.0
587,535 + 1.5
587,535 - -1.1
587,535 + -1.8
587,551 - 0.7
587,551 + 0.4
587,562 + -0.3
587,564 - 1.2
587,564 - 0.3
587,565 - 1.0
587,569 - -1.0
587,570 + 0.2
587,574 - 1.1
587,581 - 0.5
587,581 - -1.6
587,583 - -0.2
587,593 - -1.6
587,595 - -0.5
587,595 - 0.2
587,600 - 0.2