Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3352

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461320 to 463748 11719 mRNA_3352: 11720 - K06699 PSME4 proteasome activator subunit 4, at 464153 to 471579 11720 mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471874 to 478185 11721

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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463,440 - 11719 mRNA_3351 0.87 -0.2
463,801 + -0.3
463,890 - 2.0
463,919 - -0.4
463,953 + 1.2
464,075 - -0.6
464,075 - -0.2
464,083 - 0.0
464,083 - 0.4
464,085 + 0.7
464,089 - 0.9
464,118 + 0.7
464,143 + -0.5
464,221 + 0.2
464,224 - 0.2
464,232 - -0.5
464,237 - -0.4
464,271 + 0.5
464,352 - -0.1
464,352 - -0.0
464,358 + 1.7
464,373 - 2.5
464,388 + 0.8
464,394 + -0.2
464,395 - -0.5
464,517 - 0.2
464,519 + -0.4
464,651 + 0.3
464,791 + 0.7
464,797 + 0.8
464,814 - 0.5
465,065 + 11720 mRNA_3352 0.12 0.3
465,261 + 11720 mRNA_3352 0.15 0.1
465,262 - 11720 mRNA_3352 0.15 1.3
465,369 + 11720 mRNA_3352 0.16 0.7
465,431 + 11720 mRNA_3352 0.17 -1.3
465,468 - 11720 mRNA_3352 0.18 1.4
465,524 + 11720 mRNA_3352 0.18 0.6
465,638 - 11720 mRNA_3352 0.20 0.2
465,781 + 11720 mRNA_3352 0.22 0.2
465,884 + 11720 mRNA_3352 0.23 1.5
465,966 + 11720 mRNA_3352 0.24 1.5
466,085 + 11720 mRNA_3352 0.26 -0.0
466,290 - 11720 mRNA_3352 0.29 0.3
466,374 + 11720 mRNA_3352 0.30 -0.3
466,537 - 11720 mRNA_3352 0.32 0.0
466,543 - 11720 mRNA_3352 0.32 0.9
466,657 - 11720 mRNA_3352 0.34 0.7
466,659 + 11720 mRNA_3352 0.34 -1.1
466,661 + 11720 mRNA_3352 0.34 0.0
466,700 + 11720 mRNA_3352 0.34 2.0
466,751 - 11720 mRNA_3352 0.35 0.5
466,766 + 11720 mRNA_3352 0.35 0.7
466,788 - 11720 mRNA_3352 0.35 -0.3
466,880 - 11720 mRNA_3352 0.37 0.6
466,888 - 11720 mRNA_3352 0.37 1.2
466,909 - 11720 mRNA_3352 0.37 0.7
466,970 + 11720 mRNA_3352 0.38 0.5
466,980 - 11720 mRNA_3352 0.38 1.6
467,006 + 11720 mRNA_3352 0.38 0.0
467,018 + 11720 mRNA_3352 0.39 0.1
467,054 + 11720 mRNA_3352 0.39 -1.3
467,120 + 11720 mRNA_3352 0.40 0.2
467,127 + 11720 mRNA_3352 0.40 1.0
467,192 + 11720 mRNA_3352 0.41 0.5
467,256 + 11720 mRNA_3352 0.42 -1.2
467,352 + 11720 mRNA_3352 0.43 -2.9
467,352 + 11720 mRNA_3352 0.43 1.4
467,372 + 11720 mRNA_3352 0.43 0.7
467,504 + 11720 mRNA_3352 0.45 -0.4
467,522 + 11720 mRNA_3352 0.45 0.7
467,527 - 11720 mRNA_3352 0.45 0.4
467,529 + 11720 mRNA_3352 0.45 1.0
467,534 + 11720 mRNA_3352 0.46 -0.6
468,081 + 11720 mRNA_3352 0.53 -0.8
468,084 - 11720 mRNA_3352 0.53 -0.6
468,144 + 11720 mRNA_3352 0.54 2.3
468,195 - 11720 mRNA_3352 0.54 -1.1
468,196 + 11720 mRNA_3352 0.54 0.3
468,425 - 11720 mRNA_3352 0.58 0.5
468,442 + 11720 mRNA_3352 0.58 0.4
468,575 + 11720 mRNA_3352 0.60 1.1
468,602 - 11720 mRNA_3352 0.60 0.8
468,646 - 11720 mRNA_3352 0.60 2.3
468,670 - 11720 mRNA_3352 0.61 1.0
468,719 + 11720 mRNA_3352 0.61 0.9
468,768 - 11720 mRNA_3352 0.62 -1.3
468,769 + 11720 mRNA_3352 0.62 1.1
468,770 + 11720 mRNA_3352 0.62 0.4
468,785 - 11720 mRNA_3352 0.62 -0.2
468,897 - 11720 mRNA_3352 0.64 -0.0
469,026 + 11720 mRNA_3352 0.66 0.6
469,027 - 11720 mRNA_3352 0.66 0.7
469,036 + 11720 mRNA_3352 0.66 -1.3
469,086 + 11720 mRNA_3352 0.66 0.4
469,101 + 11720 mRNA_3352 0.67 0.4
469,268 - 11720 mRNA_3352 0.69 1.3
469,401 + 11720 mRNA_3352 0.71 -0.5
469,457 + 11720 mRNA_3352 0.71 -0.2
469,572 + 11720 mRNA_3352 0.73 0.3
469,611 - 11720 mRNA_3352 0.73 1.3
469,680 - 11720 mRNA_3352 0.74 0.6
469,701 + 11720 mRNA_3352 0.75 -2.4
469,733 + 11720 mRNA_3352 0.75 0.1
469,735 - 11720 mRNA_3352 0.75 -0.9
469,738 - 11720 mRNA_3352 0.75 0.0
469,741 + 11720 mRNA_3352 0.75 0.9
469,748 - 11720 mRNA_3352 0.75 0.3
469,843 - 11720 mRNA_3352 0.77 -0.6
469,854 - 11720 mRNA_3352 0.77 1.1
469,929 + 11720 mRNA_3352 0.78 0.2
470,038 + 11720 mRNA_3352 0.79 -0.3
470,080 - 11720 mRNA_3352 0.80 -0.7
470,126 - 11720 mRNA_3352 0.80 -1.1
470,130 - 11720 mRNA_3352 0.80 0.8
470,160 - 11720 mRNA_3352 0.81 0.9
470,161 + 11720 mRNA_3352 0.81 1.9
470,161 + 11720 mRNA_3352 0.81 -0.7
470,164 - 11720 mRNA_3352 0.81 -0.6
470,285 - 11720 mRNA_3352 0.83 0.6
470,300 - 11720 mRNA_3352 0.83 1.0
470,313 - 11720 mRNA_3352 0.83 0.9
470,425 - 11720 mRNA_3352 0.84 0.4
470,452 - 11720 mRNA_3352 0.85 0.6
470,455 + 11720 mRNA_3352 0.85 0.7
470,488 + 11720 mRNA_3352 0.85 -0.3
470,673 - 11720 mRNA_3352 0.88 0.9
470,694 + 11720 mRNA_3352 0.88 0.3
470,734 + 11720 mRNA_3352 0.89 2.0
470,758 - 11720 mRNA_3352 0.89 -1.4
471,049 + -0.1
471,049 + -0.4
471,346 + 1.3
471,462 + 0.8
471,477 + 0.4
471,570 - 0.6
471,605 + 0.8
471,625 - 2.8
471,747 - 0.6
472,059 + 0.7