Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3315

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3314: 11682 - K00030 IDH3 isocitrate dehydrogenase (NAD+), at 372360 to 374414 11682 mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375335 to 379207 11683 mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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374,498 - -0.1
374,511 - -0.2
374,515 - 1.4
374,653 - 1.6
374,659 - 2.0
374,716 - -0.2
374,739 + 0.5
374,782 + 1.2
374,801 + -0.6
374,808 - -0.5
374,825 - -0.1
374,828 - -1.8
374,845 - -1.0
374,851 + -0.4
374,851 + -0.1
374,891 - 1.2
374,983 + 1.5
375,146 + -0.6
375,259 - 0.2
375,259 - 1.0
375,476 + -0.2
375,919 - 11683 mRNA_3315 0.15 0.8
376,418 - 11683 mRNA_3315 0.28 -1.2
376,458 - 11683 mRNA_3315 0.29 1.9
376,628 + 11683 mRNA_3315 0.33 -1.8
377,330 + 11683 mRNA_3315 0.52 0.3
377,898 - 11683 mRNA_3315 0.66 0.1
377,946 + 11683 mRNA_3315 0.67 -0.8
378,090 + 11683 mRNA_3315 0.71 -0.5
378,388 - 11683 mRNA_3315 0.79 -0.6
378,456 + 11683 mRNA_3315 0.81 0.6
378,924 - 1.3
379,125 - 0.1
379,190 + 2.0
379,207 + 0.0
379,230 - 0.7
379,334 - 0.7
379,361 - -1.4
379,366 - 2.2
379,371 - 0.8
379,375 + 1.3
379,487 - -0.7
379,511 - -1.5
379,512 + 0.5
379,524 + -0.5
379,529 - 0.4
379,536 - 2.8
379,712 + -0.6
379,827 + 11684 mRNA_3316 0.16 1.9
379,828 - 11684 mRNA_3316 0.16 1.2
379,846 - 11684 mRNA_3316 0.17 0.2
379,936 + 11684 mRNA_3316 0.23 1.0
380,118 - 11684 mRNA_3316 0.34 -0.6