Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3237

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3236: 11604 - K01755 argH, ASL argininosuccinate lyase, at 173698 to 175795 11604 mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176488 to 184590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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175,721 - 1.0
175,861 - -0.4
176,024 - 1.5
176,050 + 0.3
176,179 - 0.5
176,189 - 0.1
176,190 + 0.6
176,192 + 0.0
176,192 + 1.3
176,195 + 0.8
176,198 - -1.5
176,203 + 2.1
176,209 - 0.5
176,216 - -1.4
176,319 + -0.8
176,327 + 0.2
176,329 - -0.1
176,329 - -0.2
176,335 + -0.5
176,343 + -0.4
176,345 + -1.0
176,346 - -0.6
176,347 - -0.1
176,348 + -0.2
176,350 + 0.5
176,351 - 0.3
176,361 + 0.2
176,371 + 1.4
176,379 + -0.3
176,502 - 2.6
176,510 - -0.1
176,579 - 0.4
176,615 - 0.9
176,643 + 1.5
177,108 + 2.2
177,378 - 11605 mRNA_3237 0.11 -0.8
177,417 + 11605 mRNA_3237 0.11 0.8
177,532 + 11605 mRNA_3237 0.13 -1.7
177,642 + 11605 mRNA_3237 0.14 0.2
177,650 - 11605 mRNA_3237 0.14 1.7
178,762 + 11605 mRNA_3237 0.28 0.6
178,933 + 11605 mRNA_3237 0.30 -0.8
178,941 + 11605 mRNA_3237 0.30 -1.9
179,003 - 11605 mRNA_3237 0.31 0.4
179,481 + 11605 mRNA_3237 0.37 1.6
179,868 - 11605 mRNA_3237 0.42 1.8
179,951 + 11605 mRNA_3237 0.43 -0.7
180,518 - 11605 mRNA_3237 0.50 0.5
180,524 + 11605 mRNA_3237 0.50 -0.8
180,575 - 11605 mRNA_3237 0.50 -0.4
181,225 - 11605 mRNA_3237 0.58 2.0
181,372 + 11605 mRNA_3237 0.60 2.7
181,528 - 11605 mRNA_3237 0.62 1.4
181,796 + 11605 mRNA_3237 0.66 -0.3
182,306 - 11605 mRNA_3237 0.72 -0.1
182,393 + 11605 mRNA_3237 0.73 0.2
182,412 + 11605 mRNA_3237 0.73 1.6
182,547 + 11605 mRNA_3237 0.75 2.9
182,665 + 11605 mRNA_3237 0.76 -1.6
182,675 + 11605 mRNA_3237 0.76 0.3
182,686 - 11605 mRNA_3237 0.76 0.8
182,699 - 11605 mRNA_3237 0.77 -0.0
182,724 - 11605 mRNA_3237 0.77 -0.2
182,740 + 11605 mRNA_3237 0.77 0.6
182,740 + 11605 mRNA_3237 0.77 0.1
182,769 - 11605 mRNA_3237 0.78 -0.7
182,772 - 11605 mRNA_3237 0.78 0.3
182,796 - 11605 mRNA_3237 0.78 -0.0
182,893 - 11605 mRNA_3237 0.79 0.6
182,895 - 11605 mRNA_3237 0.79 1.0
182,904 + 11605 mRNA_3237 0.79 0.1
183,038 + 11605 mRNA_3237 0.81 1.9
183,056 - 11605 mRNA_3237 0.81 0.3
183,318 - 11605 mRNA_3237 0.84 -0.6
183,873 - 1.0
184,060 + 0.6
184,071 - -0.0
184,499 - -0.7
184,501 + -0.5
184,503 + 0.0
184,538 + 0.8
184,766 - 0.9
184,777 + -0.2
184,797 + 0.2
184,834 - 0.1
184,931 + -0.2
184,949 + 0.5
185,051 + 1.0
185,414 - 11606 mRNA_3238 0.19 0.1
185,529 + 11606 mRNA_3238 0.22 1.6
185,540 + 11606 mRNA_3238 0.22 0.3
185,547 + 11606 mRNA_3238 0.22 -0.9