Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3172

Experiments: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6329 to 7697 11540 mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7947 to 10272 11541

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
5,341 - 11539 mRNA_3171 0.75 0.2
5,477 + 11539 mRNA_3171 0.83 -2.2
5,496 - 11539 mRNA_3171 0.84 -0.2
5,503 + 11539 mRNA_3171 0.84 -2.4
5,510 + 11539 mRNA_3171 0.85 1.2
5,514 + 11539 mRNA_3171 0.85 1.5
5,600 + -0.6
5,646 - -1.1
5,663 - -1.3
5,664 + -0.7
5,769 + -0.9
5,779 - 0.6
5,781 + -1.0
5,795 - 1.0
5,801 - -0.0
5,801 + 0.3
5,803 - -0.1
5,822 - -0.1
5,824 + -0.2
5,828 - -0.6
5,835 - -0.4
5,836 - 0.7
5,836 + 1.4
5,841 - 0.4
5,842 + 2.9
5,852 - 0.3
5,868 - 0.9
5,971 + 2.0
5,974 + 0.2
5,974 - 0.4
5,978 + -0.4
5,979 - -0.5
5,981 + -0.0
5,983 + 0.2
5,984 + 3.0
5,989 - 0.5
5,991 + 0.5
6,000 + 1.8
6,001 + -1.0
6,002 - -0.8
6,008 + 0.4
6,040 - 1.4
6,068 + -0.2
6,084 + 0.3
6,084 - 0.2
6,089 + -2.0
6,094 - 0.9
6,095 - -0.1
6,096 + 1.0
6,097 + 1.2
6,099 - -1.4
6,100 + 0.4
6,110 - 0.7
6,150 + 1.0
6,153 - 0.4
6,167 + -0.3
6,180 + -0.3
6,186 - 1.8
6,194 + 0.6
6,204 + -1.4
6,230 + 1.3
6,252 - 0.9
6,310 - 1.0
6,311 - -0.9
6,321 - 1.0
6,323 + 0.3
6,327 + -0.1
6,328 - 1.1
6,330 - 1.4
6,332 - 0.4
6,333 + -0.3
6,333 + 0.5
6,334 - 1.1
6,343 + -0.4
6,347 - 0.4
6,348 + 0.0
6,349 + -1.2
6,349 - 1.0
6,353 + 0.4
6,362 - 0.1
6,364 + 0.4
6,368 + 1.5
6,369 + -0.4
6,370 + 0.1
6,372 + -0.2
6,376 - -0.2
6,387 + 2.1
6,390 - 2.3
6,392 + -1.0
6,403 + -0.9
6,408 + -0.1
6,410 + -0.5
6,419 + 0.9
6,466 + 11540 mRNA_3172 0.10 -0.6
6,471 + 11540 mRNA_3172 0.10 -0.7
6,501 + 11540 mRNA_3172 0.13 -1.2
6,512 + 11540 mRNA_3172 0.13 -0.6
6,520 + 11540 mRNA_3172 0.14 0.6
6,556 - 11540 mRNA_3172 0.17 1.0
6,563 + 11540 mRNA_3172 0.17 -0.9
6,570 + 11540 mRNA_3172 0.18 0.2
6,577 + 11540 mRNA_3172 0.18 2.0
6,580 + 11540 mRNA_3172 0.18 0.6
6,652 - 11540 mRNA_3172 0.24 0.5
6,680 + 11540 mRNA_3172 0.26 1.3
6,730 - 11540 mRNA_3172 0.29 -0.2
6,750 - 11540 mRNA_3172 0.31 0.5
6,886 + 11540 mRNA_3172 0.41 -1.3
6,998 - 11540 mRNA_3172 0.49 0.3
7,000 - 11540 mRNA_3172 0.49 -0.4
7,011 + 11540 mRNA_3172 0.50 1.9
7,286 + 11540 mRNA_3172 0.70 0.9
7,389 + 11540 mRNA_3172 0.77 -0.2
7,459 + 11540 mRNA_3172 0.83 -0.2
7,565 + -0.8
7,619 + -0.8
7,740 - 0.1
7,759 + -0.5
7,902 - 1.2
7,928 + -0.7