Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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12 + -0.3
12 + 1.9
15 + 0.2
16 + 1.6
18 + -0.2
22 + 1.4
25 + -1.1
57 - -0.5
61 - 0.5
62 + -1.3
62 + 0.1
66 + 1.6
72 + 0.9
72 + 0.0
72 + -0.4
75 + -0.9
78 - -0.6
105 + 1.1
110 - -1.5
114 + 0.4
115 + 0.7
118 + 0.9
122 + 0.5
122 - 0.3
124 + 1.0
135 + -1.7
147 + 2.4
157 + 0.5
161 + -0.0
168 + -0.7
174 + -0.4
177 - 0.3
228 + -1.2
247 + -0.2
252 - 1.6
253 - -1.1
255 + 1.7
258 + 0.1
264 - 1.4
269 + 0.7
269 - 0.1
274 + -0.7
275 - 0.7
277 + -1.5
280 + 2.6
280 + -0.3
283 - 1.3
285 - -0.7
287 + 0.3
287 + 0.7
288 + 1.3
292 - -0.0
293 + -0.1
298 + 1.0
305 - -0.3
314 + 1.4
320 + 1.5
368 + 1.3
370 - -0.5
372 + 0.1
382 + 0.2
384 + -0.1
391 + 0.6
391 - -0.7
397 + 1.8
397 - 1.1
402 + -0.5
405 + -0.3
423 - 1.3
430 + 2.3
440 + 2.3
446 + 2.9
470 + -0.6
524 + 2.6
532 + 0.0
545 - 0.9
557 + -0.7
569 + 0.1
570 - -0.8
583 + 0.4
584 + 0.1
603 - 0.2
603 + 0.4
634 - 11537 mRNA_3169 0.11 0.4
636 + 11537 mRNA_3169 0.11 -0.1
646 + 11537 mRNA_3169 0.12 0.5
661 + 11537 mRNA_3169 0.13 0.5
667 + 11537 mRNA_3169 0.14 0.3
698 + 11537 mRNA_3169 0.17 0.4
704 - 11537 mRNA_3169 0.18 0.5
705 - 11537 mRNA_3169 0.18 1.4
721 - 11537 mRNA_3169 0.19 -0.2
725 + 11537 mRNA_3169 0.20 0.3
738 - 11537 mRNA_3169 0.21 0.4
849 + 11537 mRNA_3169 0.32 0.5
871 + 11537 mRNA_3169 0.34 -0.9
883 + 11537 mRNA_3169 0.35 0.3
894 + 11537 mRNA_3169 0.37 0.8
895 + 11537 mRNA_3169 0.37 -0.0
922 + 11537 mRNA_3169 0.39 -0.1
965 - 11537 mRNA_3169 0.44 -0.6
1,012 - 11537 mRNA_3169 0.48 0.4
1,026 + 11537 mRNA_3169 0.50 2.3
1,026 + 11537 mRNA_3169 0.50 1.4
1,105 + 11537 mRNA_3169 0.58 -1.1
1,123 + 11537 mRNA_3169 0.60 0.7
1,141 + 11537 mRNA_3169 0.61 0.8
1,142 + 11537 mRNA_3169 0.61 0.9
1,165 + 11537 mRNA_3169 0.64 -0.1
1,174 - 11537 mRNA_3169 0.65 -1.4
1,174 + 11537 mRNA_3169 0.65 0.5
1,259 + 11537 mRNA_3169 0.73 1.0
1,265 + 11537 mRNA_3169 0.74 0.3
1,268 + 11537 mRNA_3169 0.74 0.9
1,269 - 11537 mRNA_3169 0.74 0.7
1,288 - 11537 mRNA_3169 0.76 1.0
1,297 + 11537 mRNA_3169 0.77 0.2
1,303 - 11537 mRNA_3169 0.78 -0.3
1,399 + 11537 mRNA_3169 0.87 1.0
1,412 - 11537 mRNA_3169 0.88 -0.0
1,419 - 11537 mRNA_3169 0.89 -0.1
1,423 - 11537 mRNA_3169 0.90 0.5
1,429 - 0.4
1,453 + -0.2
1,459 + 0.3
1,459 + -0.8
1,460 - 0.2
1,461 + 0.9
1,462 + 0.1
1,467 + 0.5
1,470 - -1.9
1,474 - 0.2
1,485 + -1.1
1,520 + -1.4
1,523 + 1.5
1,531 - -1.4
1,537 + -0.0
1,541 + -0.1
1,562 + -0.0
1,567 + -0.0
1,572 + 0.4
1,582 - -0.8
1,584 - -0.5
1,589 + -0.3
1,596 - 0.9
1,601 - 1.2
1,602 + -1.1
1,605 + -3.8
1,609 + -0.7
1,616 + -1.3
1,636 + 1.2
1,654 + 0.4
1,656 - -1.3
1,666 + 0.5
1,675 - 0.0
1,682 - -1.1
1,697 - -0.3
1,709 + 1.5
1,709 - 1.1
1,711 + 1.4
1,718 - -0.9
1,719 + -1.0
1,722 - 0.2
1,723 + 0.6
1,725 - -0.6
1,725 - -0.9
1,727 + 0.4
1,730 + -0.4
1,731 + 1.0
1,732 + -0.1
1,732 + 1.0
1,734 + 0.7
1,734 + 0.5
1,734 + 0.6
1,739 - 0.1
1,740 + -1.6
1,744 - 0.3
1,747 + -0.3
1,749 + 0.3
1,759 + -0.7
1,759 + -0.3
1,759 + -0.3
1,761 + 0.1
1,763 + 1.1
1,765 + 0.9
1,767 + 2.8
1,769 + 0.6
1,772 + 2.4
1,772 + 0.1
1,774 + 0.2
1,774 + 0.6
1,775 + 1.1
1,776 - 1.1
1,776 + -1.6
1,777 + -0.3
1,778 + 1.0
1,778 - 0.0
1,781 - 0.8
1,783 - 1.5
1,783 - 0.6
1,783 - 0.6
1,783 - -1.0
1,784 + -0.1
1,789 + 0.4
1,789 - -0.0
1,791 + 0.4
1,792 + 0.6
1,793 + 1.5
1,795 + -0.7
1,796 + -0.9
1,796 - -0.4
1,798 + 1.1
1,800 + -0.0
1,801 + 1.4
1,805 + -0.1
1,805 + -1.0
1,807 + 0.1
1,813 - 0.7
1,814 + -0.5
1,814 + 1.0
1,818 - -0.6
1,851 - -0.6
1,874 + -0.1
1,881 - 0.1
1,885 - 0.1
1,891 - -2.8
1,896 - 1.1
1,912 + 0.4
1,912 + -0.5
1,914 - -0.5
1,916 - -0.6
1,917 - 0.5
1,919 + -1.1
1,922 - 0.9
1,923 - -0.2
1,934 - 0.6
1,935 + 1.0
1,938 - 0.6
1,938 - -0.2
1,940 - -1.2
1,941 + 0.6
1,941 + 0.9
1,942 + -1.8
1,943 - -0.0
1,944 + 1.1
1,944 - 0.6
1,945 - -0.1
1,945 + 0.4
1,946 - -0.3
1,947 + 1.0
1,960 - -0.8
1,968 + 0.7
1,980 + -0.5
2,015 + 2.0
2,067 - -0.3
2,081 - 2.5
2,091 + -1.6
2,220 + 1.0
2,229 - 1.0
2,235 - -1.4
2,237 - 0.2
2,242 + 1.9
2,242 - 0.0
2,245 - 0.7
2,248 - -0.5
2,251 + 1.7
2,254 - 0.0
2,261 + 0.3
2,262 - 1.9
2,266 + 0.8
2,268 + 0.6
2,400 + 11538 mRNA_3170 0.21 -0.0
2,401 - 11538 mRNA_3170 0.21 -0.1
2,404 + 11538 mRNA_3170 0.22 0.6
2,414 + 11538 mRNA_3170 0.23 -1.5
2,420 - 11538 mRNA_3170 0.23 0.3
2,439 + 11538 mRNA_3170 0.25 -0.4
2,446 + 11538 mRNA_3170 0.26 -1.2
2,470 - 11538 mRNA_3170 0.28 1.0
2,516 - 11538 mRNA_3170 0.32 -0.3