Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3012

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71270 to 72413 11379 mRNA_3012: 11380 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 72843 to 74660 11380 mRNA_3013: 11381 - KOG1889 Putative phosphoinositide phosphatase, at 74992 to 77769 11381

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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72,484 - 1.5
72,681 - 1.6
72,681 - 0.1
72,688 - 0.2
72,715 - 1.4
72,901 + 2.0
72,950 - 1.0
72,958 - -1.5
72,984 - 1.1
73,415 + 11380 mRNA_3012 0.31 0.9
73,539 - 11380 mRNA_3012 0.38 0.8
74,408 - 11380 mRNA_3012 0.86 1.6
74,570 + 0.6
74,575 - 1.0
74,576 + 1.2
74,584 + 0.2
74,592 + 0.8
74,593 + 1.0
74,598 - 0.5
74,731 + -0.0
74,736 - 1.5
74,760 - 1.3
74,854 - -0.0
74,863 - -0.4
74,882 - 0.8
74,899 + 1.2
74,907 + 1.3
74,907 + -1.1
74,911 - 0.3
74,950 + 0.1
75,026 - -0.2