Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2672

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726293 to 729723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730581 to 733538 11040 mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734339 to 738341 11041

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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729,665 + 0.4
729,703 + -0.7
729,785 - 0.2
729,799 + 0.6
729,956 - 0.2
729,959 - -2.0
729,968 - -2.1
729,969 + 1.9
729,970 + -1.1
729,999 - 3.3
730,001 - -0.4
730,013 + 0.2
730,013 + 1.7
730,087 - 1.3
730,112 - 1.3
730,119 + -2.3
730,122 - 1.8
730,144 - 0.3
730,146 - 0.0
730,146 - -1.0
730,147 + 0.3
730,152 - -0.5
730,152 + -0.3
730,167 + -0.5
730,172 - 2.2
730,185 + -0.0
730,213 + 0.5
730,213 + -1.3
730,287 + 0.6
730,300 + -0.2
730,309 + 1.2
730,323 + 0.7
730,330 - 0.9
730,340 + 1.5
730,470 - 1.0
730,472 - 1.2
730,473 - 0.4
730,476 - 0.5
730,484 - -0.8
730,497 + 2.2
730,504 + -4.1
730,505 + 0.6
730,507 - 1.7
730,618 - 0.9
730,786 - -1.1
731,465 - 11040 mRNA_2672 0.30 -0.2
731,639 + 11040 mRNA_2672 0.36 -0.7
731,642 - 11040 mRNA_2672 0.36 -2.3
732,207 + 11040 mRNA_2672 0.55 -2.7
732,262 - 11040 mRNA_2672 0.57 -0.9
732,392 + 11040 mRNA_2672 0.61 -1.8
732,614 + 11040 mRNA_2672 0.69 -1.4
732,964 + 11040 mRNA_2672 0.81 -1.5
733,097 - 11040 mRNA_2672 0.85 -1.8
733,154 + 11040 mRNA_2672 0.87 -1.0
733,396 - 1.7
733,546 + -0.7
733,549 + 0.2
733,683 - -0.4
733,703 - 1.5
733,705 + 0.5
733,723 + -0.2
733,728 - 0.0
733,838 - 0.4
733,841 - 0.5
733,870 - -0.1
734,150 + 0.4