Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2520

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342708 to 344522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345046 to 346549 10888 mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346896 to 348680 10889

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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344,049 - 10887 mRNA_2519 0.74 -0.4
344,212 + 10887 mRNA_2519 0.83 -2.0
344,385 + 0.2
344,387 - 0.4
344,664 - -0.2
344,680 - 0.3
344,688 + 0.5
344,774 - -0.7
344,814 + 1.2
344,831 - 1.9
344,968 + 0.7
345,099 - 0.9
345,142 - -0.1
345,355 - 10888 mRNA_2520 0.21 0.4
345,406 - 10888 mRNA_2520 0.24 1.0
345,420 + 10888 mRNA_2520 0.25 0.9
345,546 - 10888 mRNA_2520 0.33 1.3
345,567 + 10888 mRNA_2520 0.35 -0.3
345,667 - 10888 mRNA_2520 0.41 1.0
345,703 + 10888 mRNA_2520 0.44 0.2
346,236 + 10888 mRNA_2520 0.79 -0.3
346,239 - 10888 mRNA_2520 0.79 -0.1
346,712 + 1.0