Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2279

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646 mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506960 to 510896 10647 mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511379 to 518850 10648

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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506,394 - 10646 mRNA_2278 0.86 0.7
506,573 - 0.7
506,579 + 0.4
506,580 - -0.5
506,712 + 0.1
506,714 + -0.9
506,718 - -0.2
506,720 + 0.8
506,843 + 0.8
506,861 - 0.0
506,867 - 1.1
506,887 - -2.0
507,019 + 1.5
507,156 + -2.1
507,290 - -1.5
507,434 - 10647 mRNA_2279 0.12 -1.5
507,447 + 10647 mRNA_2279 0.12 -1.5
507,469 + 10647 mRNA_2279 0.13 -1.1
507,471 + 10647 mRNA_2279 0.13 -4.4
507,587 + 10647 mRNA_2279 0.16 -2.2
507,734 + 10647 mRNA_2279 0.20 -0.7
508,081 + 10647 mRNA_2279 0.28 0.2
509,014 + 10647 mRNA_2279 0.52 -2.3
509,224 + 10647 mRNA_2279 0.58 -0.3
509,323 + 10647 mRNA_2279 0.60 -3.2
509,325 + 10647 mRNA_2279 0.60 -1.5
509,566 - 10647 mRNA_2279 0.66 -5.4
509,618 + 10647 mRNA_2279 0.68 -3.3
509,920 - 10647 mRNA_2279 0.75 -3.0
510,925 + -3.6
510,925 + -3.4
510,926 - -5.2
510,930 - -0.0
510,938 - 0.3
510,944 - -3.5
510,945 - -1.4
511,081 + 0.3
511,090 - 0.7
511,091 + -1.0
511,091 + 0.5
511,093 + -0.5
511,100 - -0.9
511,101 - -0.8
511,114 + 0.6
511,246 - -0.7