Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2204

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343203 to 347570 10571 mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347838 to 348942 10572 mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349439 to 350135 10573

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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347,602 - -0.2
347,606 - 2.3
347,619 + 0.6
347,619 - -1.2
347,624 + -0.3
347,624 - -0.8
347,630 - 0.9
347,685 - 0.6
347,701 - 0.5
347,705 + 0.6
347,743 - 0.4
347,744 + -0.3
347,754 - -0.8
347,759 + 2.3
347,759 + -0.1
347,761 - 0.5
347,779 - -3.7
347,800 + 0.5
347,879 - -0.1
347,892 - 1.1
347,895 + -0.3
348,042 + 10572 mRNA_2204 0.18 -0.6
348,166 + 10572 mRNA_2204 0.30 -1.0
348,193 - 10572 mRNA_2204 0.32 0.4
348,195 - 10572 mRNA_2204 0.32 1.3
349,458 - 1.2
349,479 - -0.3
349,489 - 0.7
349,639 - 10573 mRNA_2205 0.29 1.9
349,759 - 10573 mRNA_2205 0.46 0.5