Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2196

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319466 to 323008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323325 to 326120 10564 mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326896 to 330044 10565

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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322,331 - 10563 mRNA_2195 0.81 -0.2
322,463 + 10563 mRNA_2195 0.85 0.3
322,578 + 10563 mRNA_2195 0.88 0.1
322,897 - 1.4
323,314 + -0.1
323,318 - 1.0
323,445 + 0.5
323,627 + 10564 mRNA_2196 0.11 1.1
323,823 - 10564 mRNA_2196 0.18 -0.9
323,843 - 10564 mRNA_2196 0.19 0.4
324,032 + 10564 mRNA_2196 0.25 -0.9
324,050 - 10564 mRNA_2196 0.26 1.6
325,229 + 10564 mRNA_2196 0.68 0.5
326,217 - 0.9
326,238 + 0.6
326,337 + -1.0
326,354 - 0.4
326,359 - 0.6
326,373 - 0.8
326,388 - 0.2
326,511 + 0.5
326,513 + -0.6
326,515 - 0.8
326,516 + 1.7
326,520 + 1.9
326,521 - 0.7
326,522 - 0.1
326,522 + -0.3
326,648 + -0.3
326,654 - 0.6
326,659 - 0.5
326,933 - 1.2
326,979 + 2.2
327,001 + -0.3