Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2179

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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267,372 - 2.0
267,514 - 0.3
267,523 + 0.7
267,642 - -0.3
267,682 + 0.8
267,714 + -0.9
267,777 + 2.0
267,957 - -0.6
267,965 - 0.7
267,970 + 2.0
267,973 - 1.8
267,976 + 0.5
267,990 + 0.5
268,073 - 1.0
268,307 + 0.1
268,399 - 0.1
268,421 + 0.9
268,684 - 0.0
268,766 - 10547 mRNA_2179 0.11 -0.3
268,873 - 10547 mRNA_2179 0.13 1.0
268,922 + 10547 mRNA_2179 0.14 0.0
268,956 + 10547 mRNA_2179 0.14 0.5
269,052 + 10547 mRNA_2179 0.16 0.2
269,436 - 10547 mRNA_2179 0.24 1.5
269,682 - 10547 mRNA_2179 0.29 -0.4
269,710 - 10547 mRNA_2179 0.29 -0.6
269,727 - 10547 mRNA_2179 0.30 0.2
270,192 - 10547 mRNA_2179 0.39 -0.1
270,345 + 10547 mRNA_2179 0.42 -0.1
270,432 + 10547 mRNA_2179 0.43 2.4
271,142 - 10547 mRNA_2179 0.57 0.1
271,241 - 10547 mRNA_2179 0.59 0.5
271,242 + 10547 mRNA_2179 0.59 -0.6
271,986 - 10547 mRNA_2179 0.74 -0.6
272,150 + 10547 mRNA_2179 0.77 -0.1
272,414 + 10547 mRNA_2179 0.82 -0.1
272,818 - -0.2
273,226 - 1.0
273,232 - 0.1
273,263 - 2.2
273,374 - 0.3
273,402 + 1.2
273,529 - 1.9
273,531 - 0.3
273,542 + 0.7
273,560 + 0.3
273,565 - 0.2
273,566 + 0.8
273,846 + 0.3
274,173 - 10548 mRNA_2180 0.10 -0.5
274,231 - 10548 mRNA_2180 0.13 1.2