Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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33,816 + 2.0
33,833 + 1.9
33,961 + -0.1
33,964 - 0.9
33,973 + 0.5
34,091 - -0.2
34,118 + 0.5
34,215 - -0.8
34,266 - 0.6
34,369 + 2.6
34,692 - 0.4
34,980 + 10452 mRNA_2084 0.12 0.5
35,015 + 10452 mRNA_2084 0.13 -1.5
35,019 - 10452 mRNA_2084 0.13 0.3
35,150 + 10452 mRNA_2084 0.18 0.4
35,258 - 10452 mRNA_2084 0.23 1.2
35,390 - 10452 mRNA_2084 0.28 -0.6
35,754 + 10452 mRNA_2084 0.42 0.2
35,973 - 10452 mRNA_2084 0.51 0.6
35,991 + 10452 mRNA_2084 0.52 -0.8
35,991 + 10452 mRNA_2084 0.52 -0.2
36,011 - 10452 mRNA_2084 0.53 1.3
36,042 + 10452 mRNA_2084 0.54 0.8
36,149 + 10452 mRNA_2084 0.58 0.8
36,182 + 10452 mRNA_2084 0.59 -1.5
36,326 + 10452 mRNA_2084 0.65 0.8
36,373 + 10452 mRNA_2084 0.67 -0.9
36,410 + 10452 mRNA_2084 0.69 1.2
36,456 - 10452 mRNA_2084 0.70 -0.4
36,559 + 10452 mRNA_2084 0.74 0.7
37,025 - 3.5
37,197 - 1.3
37,481 - 0.1
37,483 + 0.1
37,492 - -0.3
37,496 + 0.2
37,513 - -0.1
37,569 + 0.3
37,615 + -0.6
37,615 - -2.1
37,631 + 0.1
37,635 - -1.1
37,638 + 1.8
37,639 + 0.2
37,640 - 1.4
37,644 + -0.9
37,830 - -0.0
37,837 + 1.6
37,846 + 1.9
37,923 + -0.4
37,940 + 1.9
37,940 - -0.1
38,103 - -0.3