Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1999

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704179 to 706336 10366 mRNA_1999: 10367 - Hypothetical Protein, at 706788 to 707404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707641 to 708923 10368

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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705,920 - 10366 mRNA_1998 0.81 2.1
706,128 - 0.5
706,447 + 0.3
706,849 + 1.0
706,897 + 10367 mRNA_1999 0.18 -2.1
706,914 + 10367 mRNA_1999 0.20 1.7
706,916 + 10367 mRNA_1999 0.21 -0.3
707,071 + 10367 mRNA_1999 0.46 1.5
707,347 + 0.5
707,572 + 0.0
707,645 + -0.7
707,941 + 10368 mRNA_2000 0.23 -0.0
708,062 - 10368 mRNA_2000 0.33 0.5
708,079 - 10368 mRNA_2000 0.34 0.3
708,213 + 10368 mRNA_2000 0.45 0.7
708,247 + 10368 mRNA_2000 0.47 -0.4