Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1904

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474303 to 478311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479057 to 480594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480800 to 481665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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478,198 - 0.0
478,730 - -1.1
479,113 + 0.2
479,278 + 10272 mRNA_1904 0.14 -0.5
479,284 - 10272 mRNA_1904 0.15 -1.3
479,547 + 10272 mRNA_1904 0.32 0.0
479,689 + 10272 mRNA_1904 0.41 -0.7
479,861 + 10272 mRNA_1904 0.52 0.4
480,169 + 10272 mRNA_1904 0.72 0.6
480,416 + 10272 mRNA_1904 0.88 0.3
480,691 - 1.7
480,696 + -0.8
480,706 + 0.2
480,715 + 1.2
480,723 + 0.3
480,820 + -0.1
480,831 - -0.5
480,841 + -0.8
480,841 + -0.6
480,857 + 0.1
480,905 + 10273 mRNA_1905 0.12 0.8
480,930 - 10273 mRNA_1905 0.15 0.1
480,938 + 10273 mRNA_1905 0.16 0.6
480,976 + 10273 mRNA_1905 0.20 1.8
480,982 - 10273 mRNA_1905 0.21 0.5
480,997 + 10273 mRNA_1905 0.23 1.1
481,054 + 10273 mRNA_1905 0.29 -0.6
481,093 + 10273 mRNA_1905 0.34 0.6
481,106 + 10273 mRNA_1905 0.35 -0.0
481,107 - 10273 mRNA_1905 0.35 -0.7
481,113 + 10273 mRNA_1905 0.36 -0.9
481,114 + 10273 mRNA_1905 0.36 0.5
481,129 - 10273 mRNA_1905 0.38 -0.8
481,132 + 10273 mRNA_1905 0.38 0.8
481,135 + 10273 mRNA_1905 0.39 -1.3
481,135 + 10273 mRNA_1905 0.39 -0.0
481,158 + 10273 mRNA_1905 0.41 0.2
481,170 - 10273 mRNA_1905 0.43 -0.3
481,190 + 10273 mRNA_1905 0.45 2.4
481,202 + 10273 mRNA_1905 0.46 0.7
481,213 + 10273 mRNA_1905 0.48 0.5
481,220 + 10273 mRNA_1905 0.48 -0.4
481,235 - 10273 mRNA_1905 0.50 0.2
481,236 + 10273 mRNA_1905 0.50 0.6
481,244 + 10273 mRNA_1905 0.51 0.2
481,314 - 10273 mRNA_1905 0.59 1.5
481,315 + 10273 mRNA_1905 0.59 0.9
481,334 + 10273 mRNA_1905 0.62 0.8
481,378 - 10273 mRNA_1905 0.67 2.7
481,384 + 10273 mRNA_1905 0.67 0.0
481,399 - 10273 mRNA_1905 0.69 -1.7
481,403 - 10273 mRNA_1905 0.70 -0.0
481,425 - 10273 mRNA_1905 0.72 3.0
481,432 + 10273 mRNA_1905 0.73 0.7
481,439 + 10273 mRNA_1905 0.74 -1.2
481,453 - 10273 mRNA_1905 0.75 0.3
481,454 + 10273 mRNA_1905 0.76 0.1
481,455 - 10273 mRNA_1905 0.76 -1.4
481,458 + 10273 mRNA_1905 0.76 1.1
481,465 - 10273 mRNA_1905 0.77 0.3
481,468 + 10273 mRNA_1905 0.77 -0.2
481,469 + 10273 mRNA_1905 0.77 -1.2
481,485 + 10273 mRNA_1905 0.79 0.9
481,489 - 10273 mRNA_1905 0.80 -2.3
481,501 - 10273 mRNA_1905 0.81 -0.6
481,536 + 10273 mRNA_1905 0.85 -0.1
481,549 - 10273 mRNA_1905 0.86 3.1