Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1854

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1853: 10221 - KOG4147 Uncharacterized conserved protein, at 377840 to 378489 10221 mRNA_1854: 10222 - Hypothetical Protein, at 378651 to 380549 10222 mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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378,636 - 1.4
378,652 - -0.4
378,663 - -0.4
378,798 + 1.5
378,958 + 10222 mRNA_1854 0.16 -0.7
379,013 - 10222 mRNA_1854 0.19 0.5
379,251 + 10222 mRNA_1854 0.32 0.1
379,260 + 10222 mRNA_1854 0.32 1.1
379,395 - 10222 mRNA_1854 0.39 0.4
379,543 - 10222 mRNA_1854 0.47 -0.0
379,547 + 10222 mRNA_1854 0.47 0.1
379,549 + 10222 mRNA_1854 0.47 0.5
379,643 + 10222 mRNA_1854 0.52 1.1
379,643 + 10222 mRNA_1854 0.52 -1.0
379,643 + 10222 mRNA_1854 0.52 -0.1
379,644 + 10222 mRNA_1854 0.52 1.2
379,650 + 10222 mRNA_1854 0.53 1.0
380,053 - 10222 mRNA_1854 0.74 -0.2
380,373 - -0.0
380,387 + 0.5
380,398 - 0.3
380,402 - -0.4
380,415 - 0.1
380,575 - 0.4
380,576 + 2.3
380,685 - 0.5
380,703 + -0.6
380,720 - 2.0
380,720 - 1.5
380,723 + -0.0
380,731 + 0.7
380,826 + 1.6
380,841 + 0.1
380,882 + -0.2
380,986 - -1.9
380,992 - 1.0
380,994 + 1.1
381,140 - 10223 mRNA_1855 0.15 -0.1
381,144 + 10223 mRNA_1855 0.16 0.3
381,145 - 10223 mRNA_1855 0.16 1.0
381,165 + 10223 mRNA_1855 0.17 1.0
381,408 + 10223 mRNA_1855 0.38 -0.1
381,436 - 10223 mRNA_1855 0.40 0.1