Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1822

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189 mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294810 to 296545 10190

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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293,854 - 10189 mRNA_1821 0.89 -0.0
293,983 - 0.2
294,137 - 0.5
294,190 - 0.3
294,407 - -0.7
294,410 + -0.7
294,451 + -0.8
294,562 - 0.4
295,045 - 10190 mRNA_1822 0.14 -0.1
295,911 + 10190 mRNA_1822 0.63 0.5
295,949 + 10190 mRNA_1822 0.66 -0.4
296,067 - 10190 mRNA_1822 0.72 0.5
296,194 - 10190 mRNA_1822 0.80 0.5
296,212 - 10190 mRNA_1822 0.81 -0.2
296,230 - 10190 mRNA_1822 0.82 -0.8
296,234 - 10190 mRNA_1822 0.82 -0.5
296,277 - 10190 mRNA_1822 0.85 0.2
296,286 - 10190 mRNA_1822 0.85 0.6
296,389 + -0.5
296,395 - -0.0
296,396 - 2.3
296,423 + -1.3
296,533 + 0.4
296,535 + 0.6
296,539 + -0.8
296,554 + -0.7
296,554 - 0.0
296,557 - -2.9
296,568 + -0.1
296,581 - 0.1
296,601 + -0.5
296,693 + -0.0
296,707 - -0.2
296,708 + 0.4
296,718 + 2.1
296,720 + 0.6
296,728 - -0.1
296,738 + 0.2
296,743 + 0.7
296,744 + 0.1
296,745 - -0.1
296,752 + 0.3
296,756 + 0.2
296,760 - 0.5
296,763 + 0.4
296,763 + 0.1
296,800 - 0.7
296,868 - -0.9
296,874 - -0.9
296,876 - -0.3
296,879 + 0.2
296,879 + 0.7
296,883 - 0.3
296,885 - 2.0
296,893 - 0.1
297,020 + -0.1
297,036 + 1.1
297,049 + -0.0
297,082 - -0.4
297,086 + -0.7
297,088 + -0.2
297,089 + 0.2
297,110 + -0.1
297,113 + 1.8
297,132 - -1.4
297,133 + 0.8
297,144 - -0.0
297,149 + 0.3
297,153 - -0.8
297,156 + -0.0
297,157 - 0.4
297,158 - 0.0
297,164 - -0.4
297,195 - -0.0
297,206 - 0.2
297,207 + -0.3
297,209 - 0.8
297,209 + 1.3
297,210 + -0.5
297,213 - 0.2
297,229 + 1.8
297,257 - -0.4
297,267 + -1.5
297,305 + 0.1
297,329 - 0.8
297,340 + -0.4
297,344 - 1.0
297,371 - 0.3
297,379 + -0.0
297,389 + 0.0
297,392 + -0.8
297,490 + 0.2
297,509 - -1.0
297,514 + -1.1
297,541 - 0.6