Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1811

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260255 to 261213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261573 to 264889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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260,981 + 10178 mRNA_1810 0.76 0.6
260,996 - 10178 mRNA_1810 0.77 0.4
260,999 + 10178 mRNA_1810 0.78 -1.3
261,007 + 10178 mRNA_1810 0.78 -0.3
261,013 - 10178 mRNA_1810 0.79 0.7
261,015 - 10178 mRNA_1810 0.79 -0.4
261,156 - 0.7
261,169 - 0.5
261,174 - 1.2
261,185 - 1.0
261,299 - 0.1
261,302 + -0.5
261,314 + 1.3
261,348 - 0.7
261,356 + -0.6
261,363 - 1.3
261,364 - 1.9
261,481 - 1.5
261,648 - -0.0
261,654 - 1.7
263,096 - 10179 mRNA_1811 0.46 0.4
264,832 - -0.4
264,878 + 1.0
265,020 - 0.9
265,146 + 0.1
265,865 - 10180 mRNA_1812 0.23 0.2
265,872 + 10180 mRNA_1812 0.24 -1.0