Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1714

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15983 to 18222 10082 mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18768 to 21096 10083

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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15,035 - 10081 mRNA_1713 0.63 0.2
15,147 + 10081 mRNA_1713 0.69 1.8
15,168 - 10081 mRNA_1713 0.71 1.4
15,195 - 10081 mRNA_1713 0.72 1.8
15,332 - 10081 mRNA_1713 0.81 1.2
15,394 + 10081 mRNA_1713 0.84 2.9
15,422 - 10081 mRNA_1713 0.86 0.6
15,438 + 10081 mRNA_1713 0.87 0.8
15,528 + 2.2
15,531 - 1.7
15,579 + -0.1
15,588 - 0.9
15,708 - -0.2
15,756 - 0.9
15,831 - 2.2
15,850 - 0.7
15,852 - 1.1
15,853 - -1.2
15,856 - -0.6
15,858 + -0.4
15,860 - 0.4
15,861 + -0.9
15,879 + 1.3
15,887 - 0.7
15,889 - 0.6
15,897 + -0.9
15,897 + 0.3
16,049 + 2.3
16,192 - 1.6
16,253 - 10082 mRNA_1714 0.12 0.9
16,353 + 10082 mRNA_1714 0.17 0.8
16,433 - 10082 mRNA_1714 0.20 0.2
16,475 - 10082 mRNA_1714 0.22 -0.6
16,614 + 10082 mRNA_1714 0.28 -0.3
16,658 - 10082 mRNA_1714 0.30 0.8
16,767 - 10082 mRNA_1714 0.35 2.1
16,771 - 10082 mRNA_1714 0.35 1.4
16,771 - 10082 mRNA_1714 0.35 -0.2
16,802 + 10082 mRNA_1714 0.37 0.5
16,845 - 10082 mRNA_1714 0.38 0.9
16,849 + 10082 mRNA_1714 0.39 0.6
16,853 - 10082 mRNA_1714 0.39 -0.6
16,868 + 10082 mRNA_1714 0.40 -0.7
16,918 - 10082 mRNA_1714 0.42 0.6
16,945 + 10082 mRNA_1714 0.43 1.8
16,989 - 10082 mRNA_1714 0.45 0.3
17,060 + 10082 mRNA_1714 0.48 -0.7
17,189 - 10082 mRNA_1714 0.54 0.6
17,379 + 10082 mRNA_1714 0.62 0.0
17,442 - 10082 mRNA_1714 0.65 -1.5
17,473 - 10082 mRNA_1714 0.67 0.6
17,609 - 10082 mRNA_1714 0.73 0.2
17,631 - 10082 mRNA_1714 0.74 1.2
17,661 + 10082 mRNA_1714 0.75 1.7
17,781 - 10082 mRNA_1714 0.80 -0.5
18,016 + -1.1
18,044 - -0.7
18,074 + -1.3
18,224 + -0.7
18,235 + 0.3
18,309 + 0.5
18,473 + 1.9
18,600 + 0.2
18,608 + -2.5
18,621 + 0.4
18,775 + 0.4
18,959 - -0.1