Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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26 + 0.1
27 + 0.6
28 + 0.5
31 + 1.9
31 + 0.1
41 + 0.0
66 + 0.6
72 - 1.2
72 - 0.7
93 + -0.2
104 + 0.9
105 + 0.8
108 + -0.5
120 - -1.5
128 + 0.6
135 - -0.3
136 + 0.7
136 - -0.7
137 - 0.7
137 - -0.0
138 + 0.5
139 + 0.7
141 - -0.4
150 - -0.5
151 - 0.4
155 + -1.1
155 + 1.3
156 + 0.9
158 + 1.0
173 - 0.2
175 + 1.1
180 - 0.0
215 + 0.1
220 - 0.7
234 + 0.2
254 - 0.1
283 + -0.4
304 + 0.1
322 + 0.1
324 + 0.6
427 + 0.6
453 + 10074 mRNA_1706 0.13 0.1
465 - 10074 mRNA_1706 0.14 0.7
482 + 10074 mRNA_1706 0.16 0.0
493 - 10074 mRNA_1706 0.18 0.3
647 + 10074 mRNA_1706 0.36 1.2
683 - 10074 mRNA_1706 0.40 0.0
809 + 10074 mRNA_1706 0.55 2.2
842 - 10074 mRNA_1706 0.59 0.3
844 + 10074 mRNA_1706 0.59 -0.7
848 - 10074 mRNA_1706 0.59 1.4
902 + 10074 mRNA_1706 0.66 1.1
949 - 10074 mRNA_1706 0.71 -0.5
949 - 10074 mRNA_1706 0.71 0.1
950 + 10074 mRNA_1706 0.71 0.1
974 - 10074 mRNA_1706 0.74 0.3
1,016 + 10074 mRNA_1706 0.79 -0.8
1,065 + 10074 mRNA_1706 0.85 0.7
1,118 + -0.0
1,142 + 0.6
1,155 + 0.7
1,272 - 0.7
1,281 + 1.1
1,573 + 10075 mRNA_1707 0.23 0.8
1,625 + 10075 mRNA_1707 0.27 0.5
1,625 + 10075 mRNA_1707 0.27 0.8
1,628 + 10075 mRNA_1707 0.27 0.0
1,646 + 10075 mRNA_1707 0.28 0.9
1,649 - 10075 mRNA_1707 0.28 1.8
1,680 + 10075 mRNA_1707 0.30 0.7
1,781 + 10075 mRNA_1707 0.36 0.3
1,926 + 10075 mRNA_1707 0.45 2.8
1,996 + 10075 mRNA_1707 0.49 1.1
2,005 - 10075 mRNA_1707 0.50 1.3
2,010 - 10075 mRNA_1707 0.50 0.4
2,033 + 10075 mRNA_1707 0.51 0.6
2,068 + 10075 mRNA_1707 0.53 0.9
2,076 + 10075 mRNA_1707 0.54 -1.6