Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1662

Experiments: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834385 to 835559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836200 to 837347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838138 to 838939 10031

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
835,255 + 10029 mRNA_1661 0.74 0.4
835,422 - 10029 mRNA_1661 0.88 0.4
835,733 - -0.2
835,801 + -0.7
835,823 - 0.7
835,843 + 0.5
835,857 - 0.3
835,971 + -0.7
835,996 - -1.2
836,183 + 0.5
836,275 + 1.5
836,337 + 10030 mRNA_1662 0.12 1.1
836,484 + 10030 mRNA_1662 0.25 1.6
836,574 - 10030 mRNA_1662 0.33 1.3
836,998 - 10030 mRNA_1662 0.70 0.4
837,010 - 10030 mRNA_1662 0.71 -0.2
837,340 - -0.4
837,461 + 1.0
837,669 + -1.9
837,882 + 0.4