Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1644

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012 mRNA_1645: 10013 - Hypothetical Protein, at 795092 to 795670 10013

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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792,092 - 10011 mRNA_1643 0.76 1.2
792,253 + 10011 mRNA_1643 0.83 -0.2
792,274 - 10011 mRNA_1643 0.84 0.5
792,291 - 10011 mRNA_1643 0.85 0.2
792,315 - 10011 mRNA_1643 0.86 1.7
792,558 - 0.8
792,575 + 0.9
792,683 + 0.8
792,703 + -0.2
792,714 + 1.9
792,715 - -0.5
792,746 - -0.1
792,874 - -1.4
792,876 - 0.4
792,878 + -0.1
792,879 - 0.2
792,902 - -0.1
792,903 - 0.0
793,005 + 0.4
793,054 - 10012 mRNA_1644 0.12 -0.2
793,334 + 10012 mRNA_1644 0.25 -0.4
793,755 - 10012 mRNA_1644 0.45 -1.1
793,759 + 10012 mRNA_1644 0.45 0.4
793,914 + 10012 mRNA_1644 0.53 -0.2
794,037 - 10012 mRNA_1644 0.59 -0.6
794,054 + 10012 mRNA_1644 0.59 0.5
794,251 - 10012 mRNA_1644 0.69 -0.7
794,371 + 10012 mRNA_1644 0.74 -3.6
794,503 + 10012 mRNA_1644 0.81 -0.6
794,780 + 1.1
795,237 - 10013 mRNA_1645 0.25 -0.0
795,797 + 0.9