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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706172 to 709618
9975
mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709938 to 711637
9976
mRNA_1609: 9977 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 712765 to 713275
9977
mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714472 to 715757
9978
mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715902 to 717266
9979
Group
Condition
mRNA_1607
mRNA_1608
mRNA_1609
mRNA_1610
mRNA_1611
9975
9976
9977
9978
9979
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.2
-0.1
-1.3
auxotrophy
Dropout Complete
0.0
-0.6
-0.8
-0.6
auxotrophy
YNB Glucose 75mM Arginine
0.0
-0.2
-0.4
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
0.0
0.1
0.0
-1.0
auxotrophy
YNB Glucose 75mM Methionine
0.1
-0.2
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.0
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.0
0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.0
-0.2
-0.3
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
-0.0
-0.5
0.0
auxotrophy
YNB Glucose
0.2
-0.5
0.2
-0.1
growth on oleic acid
YNB Oleic Acid
0.1
-0.3
-0.2
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.6
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
0.1
0.2
-0.6
growth on oleic acid
YNB Glucose
0.0
-0.0
-0.3
0.3
ypd buoyancy
40 hrs Median Buoyancy
0.3
-0.0
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.4
0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
-0.2
-0.0
0.1
growth on ypd
YPD
0.1
0.8
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
0.0
-0.2
-0.4
0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
0.3
0.3
-0.1
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