Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690460 to 691819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699316 to 700594 9971
Group Condition mRNA_1599 mRNA_1600 mRNA_1601 mRNA_1602 mRNA_1603
9967
9968
9969
9970
9971
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -1.7 -0.6 -0.2  
growth on ricinoleic acid YNB Methylricinoleic Acid -1.1 -0.9 -0.5 0.5  
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.7 -0.4 -0.6  
growth on oleic acid YNB Oleic Acid -0.1 -1.2 -0.4 -0.0  
auxotrophy YNB Glucose 75mM Methionine -0.5 -1.0 -0.1 0.3  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.6 -0.1 -0.3  
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.1 0.3 -0.2  
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.3 -0.0 -0.2 -0.8  
auxotrophy Dropout Complete 0.1 -0.6 -0.1 0.0  
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.5 -0.0 0.1  
auxotrophy YNB Glucose -0.1 -0.7 0.2 0.3  
growth on ricinoleic acid YNB Glucose -0.6 -0.8 0.3 0.7  
growth on oleic acid YNB Glucose 0.1 -0.6 0.1 0.1  
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.2 0.5 -0.4 -0.5  
facs on lipid accumulation Sorted No BODIPY Gate 0.5 -0.5 0.1 -0.2  
facs on lipid accumulation Sorted Low BODIPY Gate 0.5 -0.5 -0.0 -0.1  
ypd buoyancy 40 hrs Low Buoyancy -0.0 0.2 0.3 0.1  
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 0.2 0.1 0.8  
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.4 0.3 0.2  
growth on ypd YPD 0.5 0.9 0.0 -0.2  
ypd buoyancy 40 hrs High Buoyancy 0.6 0.5 0.3 -0.1  
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