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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504
9865
mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195
9866
mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455664 to 457570
9867
mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039
9868
mRNA_1501: 9869 - Hypothetical Protein, at 459271 to 459744
9869
Group
Condition
mRNA_1497
mRNA_1498
mRNA_1499
mRNA_1500
mRNA_1501
9865
9866
9867
9868
9869
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
0.3
-2.5
-0.2
growth on oleic acid
YNB Oleic Acid
0.2
-0.1
-0.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.0
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
0.3
0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
0.1
0.1
growth on oleic acid
YNB Glucose
0.0
0.0
0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.2
0.2
-0.4
0.2
auxotrophy
YNB Glucose
-0.1
-0.2
0.4
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.1
0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.4
0.0
0.0
-0.1
auxotrophy
Dropout Complete
0.0
-0.2
0.5
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
0.3
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
0.6
0.1
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.1
0.2
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.6
-0.4
0.3
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.4
-0.2
0.6
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
0.1
1.0
-0.1
growth on ypd
YPD
0.3
0.0
1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.6
0.1
0.7
-0.1
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