Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504 9865 mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455664 to 457570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868
Group Condition mRNA_1496 mRNA_1497 mRNA_1498 mRNA_1499 mRNA_1500
9864
9865
9866
9867
9868
facs on lipid accumulation Sorted Low BODIPY Gate 0.6 -0.1   0.3 -2.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 0.6   -0.4 0.3
growth on ricinoleic acid YNB Glucose -0.4 -0.1   -0.2 0.3
growth on oleic acid YNB Oleic Acid 0.1 0.2   -0.1 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.3   -0.3 0.5
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.2   -0.2 0.4
ypd buoyancy 40 hrs Low Buoyancy 0.0 -0.1   -0.0 0.1
facs on lipid accumulation Sorted No BODIPY Gate 0.2 0.1   -0.0 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 0.1   0.1 0.2
auxotrophy YNB Glucose 0.2 -0.1   -0.2 0.4
growth on oleic acid YNB Glucose 0.2 0.0   0.0 0.2
auxotrophy Dropout Complete 0.2 0.0   -0.2 0.5
ypd buoyancy 40 hrs High Buoyancy 0.5 0.2   0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.2   -0.1 0.6
ypd buoyancy 40 hrs Median Buoyancy 0.2 0.0   0.1 0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.3 0.4   0.0 0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 0.4   -0.2 0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 0.6   0.1 0.7
facs on lipid accumulation Sorted High BODIPY Gate 0.6 0.5   0.3 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 0.0   0.1 1.0
growth on ypd YPD 0.3 0.3   0.0 1.0
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