Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857
Group Condition mRNA_1485 mRNA_1486 mRNA_1487 mRNA_1488 mRNA_1489
9853
9854
9855
9856
9857
ypd buoyancy 40 hrs No Buoyancy Separation -1.3 -0.1 -1.7 -0.1 -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.2 -0.6 -0.4 -0.9
facs on lipid accumulation Sorted No BODIPY Gate -0.7 -0.1 0.4 -0.6 -0.8
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 0.0 -0.7 0.1 -0.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.3 0.1 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 -0.1 -0.0 0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy -0.1 0.1 -0.1 -0.1 -0.3
ypd buoyancy 40 hrs Low Buoyancy 0.1 -0.1 0.3 -0.0 -0.5
growth on ypd YPD -0.1 0.1 -0.2 -0.2 0.1
growth on oleic acid YNB Oleic Acid 0.3 -0.0 0.1 -0.6 0.0
auxotrophy Dropout Complete -0.1 -0.2 0.6 -0.2 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.8 0.1 0.3 -0.1 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 0.3 0.0 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.1 0.5 0.1 -0.3
growth on oleic acid YNB Glucose 0.1 0.1 0.1 -0.2 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 0.1 0.4 0.0 -0.3
growth on ricinoleic acid YNB Glucose 0.5 -0.0 -0.1 -0.1 0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.1 0.8 0.0 -0.5
auxotrophy YNB Glucose 0.1 -0.2 0.6 0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid 0.5 -0.0 0.9 -0.5 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid 0.7 -0.1 0.6 -0.2 -0.2
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