Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360687 to 364959 9836 mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366449 to 367493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368201 to 370453 9838 mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370707 to 382935 9839 mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840
Group Condition mRNA_1468 mRNA_1469 mRNA_1470 mRNA_1471 mRNA_1472
9836
9837
9838
9839
9840
growth on ricinoleic acid YNB Methylricinoleic Acid -3.4   -0.3 -1.2 0.1
growth on ricinoleic acid YNB Ricinoleic Acid -2.9   -0.4 -1.3 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.0   -0.5 -2.6 -0.6
growth on oleic acid YNB Oleic Acid -1.4   0.2 -2.4 0.1
ypd buoyancy 40 hrs No Buoyancy Separation -1.2   0.9 -3.1 -0.0
auxotrophy Dropout Complete -1.2   0.1 -2.2 0.1
growth on oleic acid YNB Glucose 0.4   0.0 -3.0 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4   0.3 -1.7 -0.4
facs on lipid accumulation Sorted High BODIPY Gate -0.9   -0.7 -0.3 0.2
auxotrophy YNB Glucose 75mM Arginine -0.7   0.4 -1.4 0.1
growth on ricinoleic acid YNB Glucose -0.3   0.0 -1.5 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1   0.1 -1.0 -0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7   0.3 -0.9 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4   -0.2 0.1 -0.4
ypd buoyancy 40 hrs Median Buoyancy -0.5   0.2 -0.5 0.2
ypd buoyancy 40 hrs High Buoyancy 0.1   0.3 -0.5 0.0
auxotrophy YNB Glucose -0.2   0.1 0.1 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.3   0.1 0.0 0.1
auxotrophy YNB Glucose 75mM Methionine -0.4   -0.0 0.5 0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0   0.5 0.0 -0.1
growth on ypd YPD 0.4   -0.5 0.8 0.4
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