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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354447 to 358959
9835
mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360687 to 364959
9836
mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366449 to 367493
9837
mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368201 to 370453
9838
mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370707 to 382935
9839
Group
Condition
mRNA_1467
mRNA_1468
mRNA_1469
mRNA_1470
mRNA_1471
9835
9836
9837
9838
9839
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.3
-2.9
-0.4
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-3.4
-0.3
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-1.2
0.9
-3.1
growth on oleic acid
YNB Oleic Acid
-0.5
-1.4
0.2
-2.4
auxotrophy
Dropout Complete
-0.6
-1.2
0.1
-2.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
-0.5
-2.6
growth on oleic acid
YNB Glucose
0.0
0.4
0.0
-3.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.9
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.4
0.3
-1.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.7
0.4
-1.4
growth on ricinoleic acid
YNB Glucose
0.0
-0.3
0.0
-1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.7
0.3
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.4
-0.2
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.1
0.1
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
-0.0
0.5
auxotrophy
YNB Glucose
-0.2
-0.2
0.1
0.1
ypd buoyancy
40 hrs High Buoyancy
0.3
0.1
0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
0.5
-0.3
0.1
0.0
growth on ypd
YPD
-0.2
0.4
-0.5
0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
-0.0
0.5
0.0
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