Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments

500 nt mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352655 to 354087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354447 to 358959 9835 mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360687 to 364959 9836 mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366449 to 367493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368201 to 370453 9838
Group Condition mRNA_1466 mRNA_1467 mRNA_1468 mRNA_1469 mRNA_1470
9834
9835
9836
9837
9838
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -3.3 -2.9   -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 -1.0 -3.4   -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -1.6 -0.9 -1.2   0.9
growth on oleic acid YNB Oleic Acid -0.9 -0.5 -1.4   0.2
auxotrophy Dropout Complete -0.5 -0.6 -1.2   0.1
facs on lipid accumulation Sorted High BODIPY Gate 0.2 -0.5 -0.9   -0.7
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.6 -0.4   -0.2
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.3 -0.4   -0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.1 -0.7   0.4
auxotrophy YNB Glucose 0.0 -0.2 -0.2   0.1
ypd buoyancy 40 hrs Median Buoyancy 0.1 -0.1 -0.5   0.2
growth on ricinoleic acid YNB Glucose 0.0 0.0 -0.3   0.0
facs on lipid accumulation Sorted Low BODIPY Gate 0.7 -0.4 -0.0   -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.3 -0.1 -0.7   0.3
growth on ypd YPD 0.2 -0.2 0.4   -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 -0.4 -0.4   0.3
growth on oleic acid YNB Glucose -0.2 0.0 0.4   0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 0.1 0.1   0.1
ypd buoyancy 40 hrs Low Buoyancy 0.3 0.5 -0.3   0.1
ypd buoyancy 40 hrs High Buoyancy 0.1 0.3 0.1   0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.8 0.2 -0.0   0.5
remove
mRNA_1466
plot
remove
mRNA_1467
plot
remove
mRNA_1468
remove
mRNA_1469
plot
remove
mRNA_1470
plot