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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224768 to 225675
9784
mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227247 to 228373
9785
mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229007 to 229464
9786
mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229918 to 235537
9787
mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236131 to 238616
9788
Group
Condition
mRNA_1416
mRNA_1417
mRNA_1418
mRNA_1419
mRNA_1420
9784
9785
9786
9787
9788
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.4
-1.1
0.1
0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.5
0.0
0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
0.1
-0.7
0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.2
-0.6
-1.2
-0.1
0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
0.6
-0.3
-0.7
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
0.3
-0.8
0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.6
0.1
-0.3
0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.6
0.2
-1.7
0.1
0.5
growth on oleic acid
YNB Glucose
-0.2
-0.3
0.2
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
0.3
0.2
-0.0
-0.4
growth on ypd
YPD
-0.7
0.3
0.1
-0.1
0.2
auxotrophy
YNB Glucose
-0.2
-0.6
0.2
0.1
0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
0.2
0.3
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
0.1
0.2
0.3
0.1
auxotrophy
Dropout Complete
0.0
-0.3
0.7
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
0.5
-0.6
0.0
0.4
auxotrophy
YNB Glucose 75mM Methionine
0.3
0.1
0.1
0.2
0.1
growth on ricinoleic acid
YNB Glucose
0.5
0.2
0.1
-0.0
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.6
0.8
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
0.5
0.6
0.3
0.3
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