Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636 mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640
Group Condition mRNA_1268 mRNA_1269 mRNA_1270 mRNA_1271 mRNA_1272
9636
9637
9638
9639
9640
growth on oleic acid YNB Oleic Acid -0.4 -1.0 0.0 0.1 0.3
ypd buoyancy 40 hrs Low Buoyancy -0.3 0.2 -0.1 -0.0 -0.4
ypd buoyancy 40 hrs High Buoyancy 0.2 -0.0 -0.0 -0.2 -0.4
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1 -0.1 -0.0 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 0.4 -0.0 0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.2 -0.0 0.1 -0.1 -0.3
auxotrophy YNB Glucose 0.2 -0.1 0.0 -0.2 0.1
growth on oleic acid YNB Glucose 0.0 -0.2 -0.1 0.1 0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.0 0.1 0.2 0.2
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 0.1 0.1 -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.2 -0.2 0.0 0.7
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.2 0.1 0.1 0.3
growth on ricinoleic acid YNB Glucose 0.3 -0.1 0.2 0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.4 -0.1 -0.3 0.0 0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 0.4 0.3 -0.1 0.2
auxotrophy Dropout Complete 0.1 0.2 0.1 0.1 0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.3 -0.0 -0.2 0.1 0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.3 -0.1 -0.4 0.1 0.9
growth on ypd YPD 0.2 -0.0 0.3 -0.2 0.8
facs on lipid accumulation Sorted No BODIPY Gate 0.0 0.3 -0.0 0.1 0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 0.3 0.2 0.0 0.7
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