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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307
9636
mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890
9637
mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936
9638
mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888
9639
mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575
9640
Group
Condition
mRNA_1268
mRNA_1269
mRNA_1270
mRNA_1271
mRNA_1272
9636
9637
9638
9639
9640
growth on oleic acid
YNB Oleic Acid
-0.4
-1.0
0.0
0.1
0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
0.2
-0.1
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.0
-0.0
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
0.4
-0.0
0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.2
-0.0
0.1
-0.1
-0.3
auxotrophy
YNB Glucose
0.2
-0.1
0.0
-0.2
0.1
growth on oleic acid
YNB Glucose
0.0
-0.2
-0.1
0.1
0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
0.1
0.2
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
0.1
0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
-0.2
0.0
0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
0.1
0.1
0.3
growth on ricinoleic acid
YNB Glucose
0.3
-0.1
0.2
0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
-0.1
-0.3
0.0
0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.4
0.3
-0.1
0.2
auxotrophy
Dropout Complete
0.1
0.2
0.1
0.1
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.3
-0.0
-0.2
0.1
0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.3
-0.1
-0.4
0.1
0.9
growth on ypd
YPD
0.2
-0.0
0.3
-0.2
0.8
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
0.3
-0.0
0.1
0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.4
0.3
0.2
0.0
0.7
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