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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495296 to 498898
9506
mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152
9507
mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364
9508
mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502606 to 503454
9509
mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503587 to 505304
9510
Group
Condition
mRNA_1138
mRNA_1139
mRNA_1140
mRNA_1141
mRNA_1142
9506
9507
9508
9509
9510
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.2
-1.3
ypd buoyancy
40 hrs High Buoyancy
-1.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
-0.3
0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
-0.4
-0.8
auxotrophy
YNB Glucose 75mM Methionine
0.1
0.1
-1.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.2
-1.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.3
0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
0.9
0.0
-0.6
auxotrophy
YNB Glucose
0.3
0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
0.9
auxotrophy
Dropout Complete
0.5
0.3
-0.4
growth on ricinoleic acid
YNB Glucose
0.5
0.1
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.3
0.0
0.5
facs on lipid accumulation
Sorted No BODIPY Gate
0.4
-0.2
0.8
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
-0.2
0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.5
0.2
0.7
growth on ypd
YPD
2.0
0.2
0.8
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