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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151634 to 153360
9361
mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154065 to 154836
9362
mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155513 to 160267
9363
mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771
9364
mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164007 to 168056
9365
Group
Condition
mRNA_993
mRNA_994
mRNA_995
mRNA_996
mRNA_997
9361
9362
9363
9364
9365
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.4
-5.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
-0.1
-5.2
-0.4
auxotrophy
YNB Glucose
-0.1
-0.5
0.1
-4.9
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.2
0.1
-3.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
0.0
-4.4
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
-0.0
-3.7
-0.4
auxotrophy
Dropout Complete
-0.1
-0.4
0.1
-3.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
0.0
-2.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.3
-0.1
-3.2
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
0.3
-0.1
-2.9
0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.2
-1.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
0.6
0.0
-2.4
0.0
growth on ypd
YPD
0.1
0.1
0.0
-1.1
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
-0.0
-0.4
-0.3
0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.0
0.1
-0.3
-0.2
0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
0.3
-0.4
-0.3
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.4
-0.4
0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
-0.6
0.4
0.1
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.4
-0.2
0.3
-0.4
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.4
-0.3
0.1
-0.1
0.1
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.1
-0.1
0.4
0.3
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