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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_872: 9240 - K01852 LSS, ERG7 lanosterol synthase, at 2080935 to 2083844
9240
mRNA_873: 9241 - K17497 PMM phosphomannomutase, at 2084129 to 2085860
9241
mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2086190 to 2086635
9242
mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2086661 to 2088947
9243
mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2089626 to 2091862
9244
Group
Condition
mRNA_872
mRNA_873
mRNA_874
mRNA_875
mRNA_876
9240
9241
9242
9243
9244
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-4.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.4
-3.6
growth on oleic acid
YNB Glucose
-0.7
0.3
-3.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
0.1
-3.7
growth on ricinoleic acid
YNB Glucose
-0.4
0.1
-3.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
-2.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
0.2
-3.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.6
-0.2
-3.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
0.1
-2.7
growth on oleic acid
YNB Oleic Acid
-0.2
0.1
-2.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
0.2
-2.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.7
0.5
-3.7
auxotrophy
YNB Glucose
-0.2
-0.1
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.8
growth on ypd
YPD
-0.8
-0.4
0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.7
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
0.2
auxotrophy
Dropout Complete
0.0
-0.3
0.6
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.2
1.0
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