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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Number of genes on each side:
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1714383 to 1716364
9086
mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1716793 to 1718081
9087
mRNA_720: 9088 - K00993 EPT1 ethanolaminephosphotransferase, at 1718861 to 1720406
9088
mRNA_721: 9089 - Hypothetical Protein, at 1720522 to 1720982
9089
mRNA_722: 9090 - HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335, at 1721535 to 1722519
9090
Group
Condition
mRNA_718
mRNA_719
mRNA_720
mRNA_721
mRNA_722
9086
9087
9088
9089
9090
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.8
-0.3
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.2
-0.3
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.3
-0.4
-0.6
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.8
-0.4
-0.9
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.1
-0.3
0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.5
-0.5
0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
-0.2
-0.6
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
-0.1
0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.4
0.3
0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.0
0.1
auxotrophy
Dropout Complete
-0.2
-0.2
-0.2
0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
0.7
0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.0
-0.1
0.2
auxotrophy
YNB Glucose
-0.3
0.0
-0.1
0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.2
0.2
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
0.1
0.2
0.5
growth on ypd
YPD
0.5
-0.0
0.5
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
0.2
0.4
0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
-0.1
-0.3
0.9
growth on oleic acid
YNB Glucose
0.0
0.3
0.0
0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
0.1
0.2
0.8
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