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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_706: 9074 - BLAST Myelin gene regulatory factor [Chaetura pelagica], at 1688032 to 1688891
9074
mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1689670 to 1691771
9075
mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1692060 to 1693397
9076
mRNA_709: 9077 - K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein, at 1694399 to 1698266
9077
mRNA_710: 9078 - Hypothetical Protein, at 1698369 to 1699949
9078
Group
Condition
mRNA_706
mRNA_707
mRNA_708
mRNA_709
mRNA_710
9074
9075
9076
9077
9078
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-2.6
-0.2
-0.2
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.7
-0.7
-1.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.6
-0.1
-1.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
-0.0
-0.0
-1.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.7
-0.1
-0.5
-0.0
auxotrophy
Dropout Complete
0.2
-0.4
-0.0
-1.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.4
-0.5
0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
0.0
-0.8
-0.2
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.1
0.1
-1.1
-0.1
auxotrophy
YNB Glucose
0.1
-0.1
0.1
-0.7
0.0
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
-0.0
0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
0.3
-0.7
0.1
0.2
-0.2
growth on ricinoleic acid
YNB Glucose
0.0
0.1
0.0
-0.4
-0.0
growth on ypd
YPD
-0.6
0.4
-0.2
-0.1
0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
0.2
-0.2
-0.4
0.3
growth on oleic acid
YNB Glucose
0.3
-0.1
-0.0
-0.1
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.4
-0.5
0.4
0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
0.1
-0.2
0.6
0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.1
0.5
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
-0.0
-0.5
0.6
0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
0.0
0.0
0.9
-0.0
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