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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1643444 to 1644500
9053
mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1645014 to 1645916
9054
mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1646516 to 1647919
9055
mRNA_688: 9056 - Hypothetical Protein, at 1648310 to 1648900
9056
mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1649423 to 1652202
9057
Group
Condition
mRNA_685
mRNA_686
mRNA_687
mRNA_688
mRNA_689
9053
9054
9055
9056
9057
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
0.1
-1.4
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.1
-1.1
-0.4
auxotrophy
YNB Glucose
0.1
-0.3
-0.6
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
0.0
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
0.2
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
0.2
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
0.2
-0.2
-0.5
growth on oleic acid
YNB Glucose
-0.3
0.0
-0.3
0.1
auxotrophy
Dropout Complete
0.1
-0.3
-0.4
0.2
ypd buoyancy
40 hrs High Buoyancy
0.1
0.4
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
0.0
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.0
0.1
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.4
0.5
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
0.4
-0.5
-0.3
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
0.1
0.1
0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.3
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
0.1
0.0
0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
0.2
0.2
0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.6
-0.1
0.3
0.2
growth on ypd
YPD
-0.2
0.8
0.7
0.5
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