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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1544667 to 1546033
9010
mRNA_643: 9011 - K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35, at 1546203 to 1548129
9011
mRNA_644: 9012 - KOG3020 TatD-related DNase, at 1548576 to 1549928
9012
mRNA_645: 9013 - KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis, at 1550382 to 1551455
9013
mRNA_646: 9014 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1552967 to 1555102
9014
Group
Condition
mRNA_642
mRNA_643
mRNA_644
mRNA_645
mRNA_646
9010
9011
9012
9013
9014
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
-2.8
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.1
-1.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.8
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
0.0
-0.4
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
0.3
-0.3
auxotrophy
Dropout Complete
0.1
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose
0.3
-0.1
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
0.2
-0.0
0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
0.3
0.1
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
0.0
0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.1
0.9
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
0.7
-0.4
ypd buoyancy
40 hrs Low Buoyancy
0.0
-0.0
0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
0.4
0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
0.9
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
1.1
-0.0
growth on oleic acid
YNB Glucose
0.4
-0.1
0.6
-0.3
growth on ypd
YPD
-0.1
-0.1
1.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
1.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.3
-0.1
1.7
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.4
-0.3
1.9
-0.1
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