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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_545: 8913 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1295068 to 1298428
8913
mRNA_546: 8914 - K00799 GST, gst glutathione S-transferase, at 1298658 to 1299726
8914
mRNA_547: 8915 - KOG2385 Uncharacterized conserved protein, at 1299978 to 1303835
8915
mRNA_548: 8916 - K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16, at 1304411 to 1305873
8916
mRNA_549: 8917 - K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1, at 1306606 to 1311810
8917
Group
Condition
mRNA_545
mRNA_546
mRNA_547
mRNA_548
mRNA_549
8913
8914
8915
8916
8917
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
0.4
-1.9
-0.6
ypd buoyancy
40 hrs High Buoyancy
0.1
-0.4
-1.8
0.0
auxotrophy
YNB Glucose
0.1
-0.6
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
0.2
-1.0
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.3
-1.1
0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.5
0.6
-0.4
auxotrophy
Dropout Complete
-0.3
-0.3
-0.4
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.0
0.1
0.2
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.2
-0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
-0.2
-0.6
0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
1.2
-1.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
0.7
-0.5
growth on oleic acid
YNB Oleic Acid
0.2
-0.2
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
0.0
-0.5
0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
0.0
-0.2
-0.1
0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.0
0.1
-0.6
0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
0.6
-0.6
1.1
growth on ypd
YPD
-0.2
0.8
0.3
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
0.6
0.3
0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.4
0.1
1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.3
0.3
0.6
1.0
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