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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_538: 8906 - Hypothetical Protein, at 1276720 to 1277120
8906
mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1277629 to 1279340
8907
mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1279854 to 1286363
8908
mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1286793 to 1287579
8909
mRNA_542: 8910 - KOG0118 FOG RRM domain, at 1287803 to 1289304
8910
Group
Condition
mRNA_538
mRNA_539
mRNA_540
mRNA_541
mRNA_542
8906
8907
8908
8909
8910
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-2.3
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.6
-1.8
growth on ricinoleic acid
YNB Glucose
-0.1
-2.1
-0.6
auxotrophy
Dropout Complete
0.0
-1.9
-0.3
growth on oleic acid
YNB Oleic Acid
0.1
-1.5
-0.3
growth on oleic acid
YNB Glucose
0.4
-2.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.0
-1.6
-0.0
auxotrophy
YNB Glucose 75mM Arginine
0.6
-1.9
-0.3
auxotrophy
YNB Glucose
0.4
-1.5
-0.2
growth on ypd
YPD
0.1
-0.8
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
-1.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.5
0.0
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.4
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
0.7
-0.8
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.4
-0.4
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.2
-0.1
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.3
0.9
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
1.0
-0.2
0.2
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