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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_477: 8845 - K10256 FAD2 omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase), at 1108768 to 1110470
8845
mRNA_478: 8846 - HMMPfam-Tetratricopeptide repeat-PF07719,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1111046 to 1113487
8846
mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1114132 to 1117214
8847
mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1117742 to 1121401
8848
mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1121651 to 1124733
8849
Group
Condition
mRNA_477
mRNA_478
mRNA_479
mRNA_480
mRNA_481
8845
8846
8847
8848
8849
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.7
growth on ypd
YPD
-0.2
0.1
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
0.4
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
0.3
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
0.5
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.2
-0.2
-0.1
auxotrophy
Dropout Complete
0.0
0.5
-0.6
growth on ricinoleic acid
YNB Glucose
0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
0.4
-0.3
auxotrophy
YNB Glucose
0.0
0.6
-0.4
growth on oleic acid
YNB Oleic Acid
0.1
0.2
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.5
-0.2
growth on oleic acid
YNB Glucose
0.4
0.3
0.3
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