Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644049 to 645349 8637 mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645622 to 646120 8638 mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646438 to 653784 8639 mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654316 to 655397 8640
Group Condition mRNA_268 mRNA_269 mRNA_270 mRNA_271 mRNA_272
8636
8637
8638
8639
8640
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 0.8     -2.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 0.2     -1.9
facs on lipid accumulation Sorted High BODIPY Gate -0.5 0.1     -1.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 0.3     -1.8
ypd buoyancy 40 hrs High Buoyancy -0.4 0.4     -1.4
auxotrophy Dropout Complete -0.1 -0.1     -0.9
facs on lipid accumulation Sorted Low BODIPY Gate 0.1 0.0     -1.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.7 0.4     -2.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 0.5     -1.3
ypd buoyancy 40 hrs Median Buoyancy -0.6 0.2     -0.5
growth on ypd YPD -0.2 -0.3     -0.3
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.4     -0.2
growth on oleic acid YNB Glucose -0.3 -0.2     0.0
auxotrophy YNB Glucose 75mM Methionine 0.2 -0.4     -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid 0.4 -0.3     -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.2     0.2
growth on ricinoleic acid YNB Glucose -0.2 -0.1     0.3
auxotrophy YNB Glucose 0.2 -0.2     -0.1
ypd buoyancy 40 hrs Low Buoyancy 0.3 0.1     -0.3
growth on ricinoleic acid YNB Ricinoleic Acid 0.2 -0.3     0.5
growth on oleic acid YNB Oleic Acid 0.5 0.1     0.3
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