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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545315 to 547571
8589
mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547787 to 548767
8590
mRNA_223: 8591 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 548978 to 553115
8591
mRNA_224: 8592 - K07300 chaA, CAX Ca2+-H+ antiporter, at 554235 to 556538
8592
mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556962 to 559070
8593
Group
Condition
mRNA_221
mRNA_222
mRNA_223
mRNA_224
mRNA_225
8589
8590
8591
8592
8593
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
-1.8
-0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
-1.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.3
-1.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
-1.2
0.0
auxotrophy
Dropout Complete
-0.2
-0.2
-0.9
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
0.0
-0.3
-0.7
auxotrophy
YNB Glucose
-0.1
-0.1
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
-0.1
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
0.3
-1.3
0.7
ypd buoyancy
40 hrs Low Buoyancy
0.0
-0.1
-0.8
0.3
growth on oleic acid
YNB Glucose
-0.0
-0.1
0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.1
2.3
-0.9
growth on oleic acid
YNB Oleic Acid
0.2
0.4
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.0
-0.1
0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
0.1
0.3
0.5
growth on ypd
YPD
0.1
0.5
0.6
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
0.0
2.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
1.1
0.3
3.4
-0.2
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