Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_219: 8587 - Hypothetical Protein, at 541631 to 542423 8587 mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542754 to 544832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545315 to 547571 8589 mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547787 to 548767 8590 mRNA_223: 8591 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 548978 to 553115 8591
Group Condition mRNA_219 mRNA_220 mRNA_221 mRNA_222 mRNA_223
8587
8588
8589
8590
8591
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.2 -1.2   -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.3 -0.4 -0.2   0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.1 -0.0 -0.2   -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.1 -0.1 0.1   -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.0 0.1 0.1   -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -0.3 -0.3   0.3
auxotrophy YNB Glucose 75mM Methionine -0.3 0.0 -0.3   -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.5 -0.1 -0.1   0.0
ypd buoyancy 40 hrs Low Buoyancy -0.4 -0.0 0.0   -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 -0.1   0.3
growth on ricinoleic acid YNB Glucose 0.3 -0.0 -0.5   -0.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.3 -0.0 -0.1   -0.2
growth on oleic acid YNB Glucose -0.0 0.0 -0.0   -0.1
auxotrophy YNB Glucose -0.0 0.2 -0.1   -0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 0.3 -0.1   -0.3
ypd buoyancy 40 hrs High Buoyancy -0.1 0.1 -0.0   0.1
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.1 0.2   -0.0
auxotrophy Dropout Complete 0.5 0.3 -0.2   -0.2
growth on oleic acid YNB Oleic Acid -0.2 0.2 0.2   0.4
growth on ypd YPD 0.7 -0.3 0.1   0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.1 0.1 1.1   0.3
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